From fc9faf5124e042fdeb15881ce486d3c114ddaca7 Mon Sep 17 00:00:00 2001
From: David Georg Reichelt <davidgeorg_reichelt@dagere.de>
Date: Fri, 20 Aug 2021 15:26:45 +0200
Subject: [PATCH] Only add $(pwd) if no absolute path is given

---
 frameworks/runR.sh | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/frameworks/runR.sh b/frameworks/runR.sh
index 3f4a207..46a1c04 100755
--- a/frameworks/runR.sh
+++ b/frameworks/runR.sh
@@ -3,7 +3,15 @@ then
 	echo "Please pass the folder that should be analyzed"
 fi
 
-BASE_DIR=$(pwd)/$1
+if [[ "$1" = /* ]]
+then
+	echo "absolute path"
+	BASE_DIR=$1
+else
+	echo "relative path"
+	BASE_DIR=$(pwd)/$1
+fi
+
 source common-functions.sh
 
 source $1/labels.sh
-- 
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