initial commit

bare/build.sh

+#!/bin/bash
+
+MITgcmP=$(pwd)/MITgcm-git
+
+while getopts d:khai option
+do
+  case "${option}"
+  in
+    d) DATADIR=${OPTARG};;
+    k) KEEP=1;;
+    h) HELP=1;;
+    a) ARCHITECTURE=${OPTARG};;
+    i) INSTALL=1;;
+  esac
+done
+	
+if [ ! -z "$HELP" ] || [ -z "$DATADIR" ]; then
+	echo -e  "\nOPTIONS:\n -d dir \tlocation of computing data (mandatory)\n -i\t\tinstall required packages\n -k\t\tkeep binary files\n -a\t\tarchitecture [amd64(default), ia32]\n -h\t\thelp "
+  exit 0
+fi
+
+if [[ ! "$DATADIR" = /* ]]; then
+  DATADIR=$(pwd)/$DATADIR
+fi
+
+if [ -z "$ARCHITECTURE" ]; then
+  ARCHITECTURE=amd64
+fi
+
+if [ ! -z "$INSTALL" ]; then
+  sudo apt-get -y update  
+  sudo apt-get -y install build-essential git gfortran python python3
+fi
+
+git clone https://github.com/MITgcm/MITgcm.git $MITgcmP
+cd $DATADIR/build
+rm Makefile -rf
+$MITgcmP/tools/genmake2 -mods ../code -of $MITgcmP/tools/build_options/linux_${ARCHITECTURE}_gfortran -rootdir $MITgcmP
+make depend
+make
+
+cd $DATADIR/run
+ln -s ../input/* .
+ln -s ../build/mitgcmuv .
+./mitgcmuv > output.txt
+
+if [ -z $KEEP ]; then
+  rm $MITgcmP -rf 
+fi

docker/build/Dockerfile

+FROM mitgcm/testreport-images:ubuntu_18_04_villon
+
+RUN git clone https://github.com/MITgcm/MITgcm.git /MITgcm
+
+COPY build.sh /MITgcm
+
+CMD cd /data; /MITgcm/build.sh

docker/build/build.sh

+#!/bin/sh
+
+cd /data/build
+/MITgcm/tools/genmake2 -mods ../code -of /MITgcm/tools/build_options/linux_amd64_gfortran -rootdir /MITgcm
+make depend
+make
+
+cd /data/run
+ln -s ../input/* .
+ln -s ../build/mitgcmuv .
+./mitgcmuv > output.txt

docker/build/docker-compose.yml

+version: "2"
+
+services:
+  mitgcm:
+    build:
+      context: .
+      dockerfile: Dockerfile
+    container_name: mitgcm-runner
+    #    environment:
+            #      - MITGCM_EXP=tutorial_barotropic_gyre
+            #      - MITGCM_PRECS="16 16"
+    volumes:
+      - ../data:/data
+      - /etc/timezone:/etc/timezone:ro
+      - /etc/localtime:/etc/localtime:ro