Merge branch '160-Remove-previous-Python-implementation' into 'theodolite-kotlin'

Remove-previous-Python-implementation

See merge request !110

execution/Dockerfile

-FROM python:3.8
-
-RUN mkdir /app
-WORKDIR /app
-ADD requirements.txt /app/
-RUN pip install -r requirements.txt
-COPY uc-workload-generator /app/uc-workload-generator
-COPY uc-application /app/uc-application
-COPY strategies /app/strategies
-COPY lib /app/lib
-COPY lag_analysis.py /app/
-COPY run_uc.py /app/
-COPY theodolite.py /app/
-
-CMD ["python", "/app/theodolite.py"]

execution/lag_analysis.py

-import sys
-import os
-import requests
-from datetime import datetime, timedelta, timezone
-import pandas as pd
-import matplotlib.pyplot as plt
-import csv
-import logging
-
-
-def main(exp_id, benchmark, dim_value, instances, execution_minutes, prometheus_base_url, result_path):
-    print("Main")
-    time_diff_ms = int(os.getenv('CLOCK_DIFF_MS', 0))
-
-    now_local = datetime.utcnow().replace(tzinfo=timezone.utc).replace(microsecond=0)
-    now = now_local - timedelta(milliseconds=time_diff_ms)
-    print(f"Now Local: {now_local}")
-    print(f"Now Used: {now}")
-
-    end = now
-    start = now - timedelta(minutes=execution_minutes)
-
-    #print(start.isoformat().replace('+00:00', 'Z'))
-    #print(end.isoformat().replace('+00:00', 'Z'))
-
-    response = requests.get(prometheus_base_url + '/api/v1/query_range', params={
-        # 'query': "sum by(job,topic)(kafka_consumer_consumer_fetch_manager_metrics_records_lag)",
-        'query': "sum by(group, topic)(kafka_consumergroup_group_lag > 0)",
-        'start': start.isoformat(),
-        'end': end.isoformat(),
-        'step': '5s'})
-    # response
-    # print(response.request.path_url)
-    # response.content
-    results = response.json()['data']['result']
-
-    d = []
-
-    for result in results:
-        # print(result['metric']['topic'])
-        topic = result['metric']['topic']
-        for value in result['values']:
-            # print(value)
-            d.append({'topic': topic, 'timestamp': int(
-                value[0]), 'value': int(value[1]) if value[1] != 'NaN' else 0})
-
-    df = pd.DataFrame(d)
-
-    # Do some analysis
-
-    input = df.loc[df['topic'] == "input"]
-
-    # input.plot(kind='line',x='timestamp',y='value',color='red')
-    # plt.show()
-
-    from sklearn.linear_model import LinearRegression
-
-    # values converts it into a numpy array
-    X = input.iloc[:, 1].values.reshape(-1, 1)
-    # -1 means that calculate the dimension of rows, but have 1 column
-    Y = input.iloc[:, 2].values.reshape(-1, 1)
-    linear_regressor = LinearRegression()  # create object for the class
-    linear_regressor.fit(X, Y)  # perform linear regression
-    Y_pred = linear_regressor.predict(X)  # make predictions
-
-    print(linear_regressor.coef_)
-
-    # print(Y_pred)
-
-    fields = [exp_id, datetime.now(), benchmark, dim_value,
-              instances, linear_regressor.coef_]
-    print(fields)
-    with open(f'{result_path}/results.csv', 'a') as f:
-        writer = csv.writer(f)
-        writer.writerow(fields)
-
-    filename = f"{result_path}/exp{exp_id}_{benchmark}_{dim_value}_{instances}"
-
-    plt.plot(X, Y)
-    plt.plot(X, Y_pred, color='red')
-
-    plt.savefig(f"{filename}_plot.png")
-
-    df.to_csv(f"{filename}_values.csv")
-
-    # Load total lag count
-
-    response = requests.get(prometheus_base_url + '/api/v1/query_range', params={
-        'query': "sum by(group)(kafka_consumergroup_group_lag > 0)",
-        'start': start.isoformat(),
-        'end': end.isoformat(),
-        'step': '5s'})
-
-    results = response.json()['data']['result']
-
-    d = []
-
-    for result in results:
-        # print(result['metric']['topic'])
-        group = result['metric']['group']
-        for value in result['values']:
-            # print(value)
-            d.append({'group': group, 'timestamp': int(
-                value[0]), 'value': int(value[1]) if value[1] != 'NaN' else 0})
-
-    df = pd.DataFrame(d)
-
-    df.to_csv(f"{filename}_totallag.csv")
-
-    # Load partition count
-
-    response = requests.get(prometheus_base_url + '/api/v1/query_range', params={
-        'query': "count by(group,topic)(kafka_consumergroup_group_offset > 0)",
-        'start': start.isoformat(),
-        'end': end.isoformat(),
-        'step': '5s'})
-
-    results = response.json()['data']['result']
-
-    d = []
-
-    for result in results:
-        # print(result['metric']['topic'])
-        topic = result['metric']['topic']
-        for value in result['values']:
-            # print(value)
-            d.append({'topic': topic, 'timestamp': int(
-                value[0]), 'value': int(value[1]) if value[1] != 'NaN' else 0})
-
-    df = pd.DataFrame(d)
-
-    df.to_csv(f"{filename}_partitions.csv")
-
-    # Load instances count
-
-    response = requests.get(prometheus_base_url + '/api/v1/query_range', params={
-        'query': "count(count (kafka_consumer_consumer_fetch_manager_metrics_records_lag) by(pod))",
-        'start': start.isoformat(),
-        'end': end.isoformat(),
-        'step': '5s'})
-
-    results = response.json()['data']['result']
-
-    d = []
-
-    for result in results:
-        for value in result['values']:
-            # print(value)
-            d.append({'timestamp': int(value[0]), 'value': int(value[1])})
-
-    df = pd.DataFrame(d)
-
-    df.to_csv(f"{filename}_instances.csv")
-
-
-if __name__ == '__main__':
-    logging.basicConfig(level=logging.INFO)
-
-    # Load arguments
-    exp_id = sys.argv[1]
-    benchmark = sys.argv[2]
-    dim_value = sys.argv[3]
-    instances = sys.argv[4]
-    execution_minutes = int(sys.argv[5])
-
-    main(exp_id, benchmark, dim_value, instances, execution_minutes,
-        'http://localhost:9090', 'results')

execution/lib/cli_parser.py

-import argparse
-import os
-
-
-def env_list_default(env, tf):
-    """
-    Makes a list from an environment string.
-    """
-    v = os.environ.get(env)
-    if v is not None:
-        v = [tf(s) for s in v.split(',')]
-    return v
-
-
-def key_values_to_dict(kvs):
-    """
-    Given a list with key values in form `Key=Value` it creates a dict from it.
-    """
-    my_dict = {}
-    for kv in kvs:
-        k, v = kv.split("=")
-        my_dict[k] = v
-    return my_dict
-
-
-def env_dict_default(env):
-    """
-    Makes a dict from an environment string.
-    """
-    v = os.environ.get(env)
-    if v is not None:
-        return key_values_to_dict(v.split(','))
-    else:
-        return dict()
-
-
-class StoreDictKeyPair(argparse.Action):
-    def __init__(self, option_strings, dest, nargs=None, **kwargs):
-        self._nargs = nargs
-        super(StoreDictKeyPair, self).__init__(
-            option_strings, dest, nargs=nargs, **kwargs)
-
-    def __call__(self, parser, namespace, values, option_string=None):
-        my_dict = key_values_to_dict(values)
-        setattr(namespace, self.dest, my_dict)
-
-
-def default_parser(description):
-    """
-    Returns the default parser that can be used for thodolite and run uc py
-    :param description: The description the argument parser should show.
-    """
-    parser = argparse.ArgumentParser(description=description)
-    parser.add_argument('--uc',
-                        metavar='<uc>',
-                        default=os.environ.get('UC'),
-                        help='[mandatory] use case number, one of 1, 2, 3 or 4')
-    parser.add_argument('--partitions', '-p',
-                        metavar='<partitions>',
-                        type=int,
-                        default=os.environ.get('PARTITIONS', 40),
-                        help='Number of partitions for Kafka topics')
-    parser.add_argument('--cpu-limit', '-cpu',
-                        metavar='<CPU limit>',
-                        default=os.environ.get('CPU_LIMIT', '1000m'),
-                        help='Kubernetes CPU limit')
-    parser.add_argument('--memory-limit', '-mem',
-                        metavar='<memory limit>',
-                        default=os.environ.get('MEMORY_LIMIT', '4Gi'),
-                        help='Kubernetes memory limit')
-    parser.add_argument('--duration', '-d',
-                        metavar='<duration>',
-                        type=int,
-                        default=os.environ.get('DURATION', 5),
-                        help='Duration in minutes subexperiments should be \
-                                executed for')
-    parser.add_argument('--namespace',
-                        metavar='<NS>',
-                        default=os.environ.get('NAMESPACE', 'default'),
-                        help='Defines the Kubernetes where the applications should run')
-    parser.add_argument('--reset',
-                        action="store_true",
-                        default=os.environ.get(
-                            'RESET', 'false').lower() == 'true',
-                        help='Resets the environment before execution')
-    parser.add_argument('--reset-only',
-                        action="store_true",
-                        default=os.environ.get(
-                            'RESET_ONLY', 'false').lower() == 'true',
-                        help='Only resets the environment. Ignores all other parameters')
-    parser.add_argument('--prometheus',
-                        metavar='<URL>',
-                        default=os.environ.get(
-                            'PROMETHEUS_BASE_URL', 'http://localhost:9090'),
-                        help='Defines where to find the prometheus instance')
-    parser.add_argument('--path',
-                        metavar='<path>',
-                        default=os.environ.get('RESULT_PATH', 'results'),
-                        help='A directory path for the results')
-    parser.add_argument("--configurations",
-                        metavar="KEY=VAL",
-                        dest="configurations",
-                        action=StoreDictKeyPair,
-                        nargs="+",
-                        default=env_dict_default('CONFIGURATIONS'),
-                        help='Defines the environment variables for the UC')
-    return parser
-
-
-def benchmark_parser(description):
-    """
-    Parser for the overall benchmark execution
-    :param description: The description the argument parser should show.
-    """
-    parser = default_parser(description)
-
-    parser.add_argument('--loads',
-                        metavar='<load>',
-                        type=int,
-                        nargs='+',
-                        default=env_list_default('LOADS', int),
-                        help='[mandatory] Loads that should be executed')
-    parser.add_argument('--instances', '-i',
-                        dest='instances_list',
-                        metavar='<instances>',
-                        type=int,
-                        nargs='+',
-                        default=env_list_default('INSTANCES', int),
-                        help='[mandatory] List of instances used in benchmarks')
-    parser.add_argument('--domain-restriction',
-                        action="store_true",
-                        default=os.environ.get(
-                            'DOMAIN_RESTRICTION', 'false').lower() == 'true',
-                        help='To use domain restriction. For details see README')
-    parser.add_argument('--search-strategy',
-                        metavar='<strategy>',
-                        default=os.environ.get('SEARCH_STRATEGY', 'default'),
-                        help='The benchmarking search strategy. Can be set to default, linear-search or binary-search')
-    parser.add_argument('--threshold',
-                        type=int,
-                        metavar='<threshold>',
-                        default=os.environ.get('THRESHOLD', 2000),
-                        help='The threshold for the trend slop that the search strategies use to determine that a load could be handled')
-    return parser
-
-
-def execution_parser(description):
-    """
-    Parser for executing one use case
-    :param description: The description the argument parser should show.
-    """
-    parser = default_parser(description)
-    parser.add_argument('--exp-id',
-                        metavar='<exp id>',
-                        default=os.environ.get('EXP_ID'),
-                        help='[mandatory] ID of the experiment')
-    parser.add_argument('--load',
-                        metavar='<load>',
-                        type=int,
-                        default=os.environ.get('LOAD'),
-                        help='[mandatory] Load that should be used for benchmakr')
-    parser.add_argument('--instances',
-                        metavar='<instances>',
-                        type=int,
-                        default=os.environ.get('INSTANCES'),
-                        help='[mandatory] Numbers of instances to be benchmarked')
-    return parser

execution/lib/trend_slope_computer.py

-from sklearn.linear_model import LinearRegression
-import pandas as pd
-import os
-
-def compute(directory, filename, warmup_sec):
-    df = pd.read_csv(os.path.join(directory, filename))
-    input = df
-    input['sec_start'] = input.loc[0:, 'timestamp'] - input.iloc[0]['timestamp']
-    regress = input.loc[input['sec_start'] >= warmup_sec] # Warm-Up
-
-    X = regress.iloc[:, 2].values.reshape(-1, 1)  # values converts it into a numpy array
-    Y = regress.iloc[:, 3].values.reshape(-1, 1)  # -1 means that calculate the dimension of rows, but have 1 column
-    linear_regressor = LinearRegression()  # create object for the class
-    linear_regressor.fit(X, Y)  # perform linear regression
-    Y_pred = linear_regressor.predict(X)  # make predictions
-
-    trend_slope = linear_regressor.coef_[0][0]
-
-    return trend_slope

execution/requirements.txt

-matplotlib==3.2.0
-pandas==1.0.1
-requests==2.23.0
-scikit-learn==0.22.2.post1
-
-# For run_uc.py
-kubernetes==11.0.0
-confuse==1.1.0

execution/strategies/config.py

-from dataclasses import dataclass
-
-@dataclass
-class ExperimentConfig:
-    """ Wrapper for the configuration of an experiment. """
-    use_case: str
-    exp_id: int
-    dim_values: list
-    replicass: list
-    partitions: int
-    cpu_limit: str
-    memory_limit: str
-    execution_minutes: int
-    prometheus_base_url: str
-    reset: bool
-    namespace: str
-    result_path: str
-    configurations: dict
-    domain_restriction_strategy: object
-    search_strategy: object
-    threshold: int
-    subexperiment_executor: object
-    subexperiment_evaluator: object

execution/strategies/experiment_execution.py

-class ExperimentExecutor:
-    def __init__(self, config):
-        self.config=config
-    
-    def execute(self):
-        self.config.domain_restriction_strategy.execute(self.config)

execution/strategies/strategies/config.py

-from dataclasses import dataclass
-
-@dataclass
-class SubexperimentConfig:
-    """ Wrapper for the configuration of a subexperiment """
-    use_case: str
-    exp_id: int
-    counter: int
-    dim_value: int
-    replicas: int
-    partitions: int
-    cpu_limit: str
-    memory_limit: str
-    execution_minutes: int
-    prometheus_base_url: str
-    reset: bool
-    namespace: str
-    result_path: str
-    configurations: dict

execution/strategies/strategies/domain_restriction/lower_bound_strategy.py

-# The lower bound strategy
-def execute(config):
-    dim_value_index = 0
-    lower_bound_replicas_index = 0
-    subexperiment_counter = 0
-    while dim_value_index < len(config.dim_values) and lower_bound_replicas_index >= 0 and lower_bound_replicas_index < len(config.replicass):
-        lower_bound_replicas_index, subexperiment_counter = config.search_strategy.execute(
-            config=config,
-            dim_value_index=dim_value_index,
-            lower_replicas_bound_index=lower_bound_replicas_index,
-            subexperiment_counter=subexperiment_counter)
-        dim_value_index+=1
\ No newline at end of file

execution/strategies/strategies/domain_restriction/no_lower_bound_strategy.py

-# The strategy where the domain contains all amounts of instances
-def execute(config):
-    dim_value_index = 0
-    subexperiment_counter = 0
-    while dim_value_index < len(config.dim_values):
-        _, subexperiment_counter = config.search_strategy.execute(
-            config=config,
-            dim_value_index=dim_value_index,
-            lower_replicas_bound_index=0,
-            subexperiment_counter=subexperiment_counter)
-        dim_value_index+=1
\ No newline at end of file

execution/strategies/strategies/search/binary_search_strategy.py

-# The binary search strategy
-import os
-from strategies.strategies.config import SubexperimentConfig
-
-def binary_search(config, dim_value, lower, upper, subexperiment_counter):
-    if lower == upper:
-        print(f"Run subexperiment {subexperiment_counter} with config {dim_value} {config.replicass[lower]}")
-        subexperiment_config = SubexperimentConfig(config.use_case, config.exp_id, subexperiment_counter, dim_value, config.replicass[lower], config.partitions, config.cpu_limit, config.memory_limit, config.execution_minutes, config.prometheus_base_url, config.reset, config.namespace, config.result_path, config.configurations)
-        config.subexperiment_executor.execute(subexperiment_config)
-        success = config.subexperiment_evaluator.execute(subexperiment_config,
-                                                         config.threshold)
-        if success: # successful, the upper neighbor is assumed to also has been successful
-            return (lower, subexperiment_counter+1)
-        else: # not successful
-            return (lower+1, subexperiment_counter)
-    elif lower+1==upper:
-        print(f"Run subexperiment {subexperiment_counter} with config {dim_value} {config.replicass[lower]}")
-        subexperiment_config = SubexperimentConfig(config.use_case, config.exp_id, subexperiment_counter, dim_value, config.replicass[lower], config.partitions, config.cpu_limit, config.memory_limit, config.execution_minutes, config.prometheus_base_url, config.reset, config.namespace, config.result_path, config.configurations)
-        config.subexperiment_executor.execute(subexperiment_config)
-        success = config.subexperiment_evaluator.execute(subexperiment_config,
-                                                         config.threshold)
-        if success: # minimal instances found
-            return (lower, subexperiment_counter)
-        else: # not successful, check if lower+1 instances are sufficient
-            print(f"Run subexperiment {subexperiment_counter} with config {dim_value} {config.replicass[upper]}")
-            subexperiment_config = SubexperimentConfig(config.use_case, config.exp_id, subexperiment_counter, dim_value, config.replicass[upper], config.partitions, config.cpu_limit, config.memory_limit, config.execution_minutes, config.prometheus_base_url, config.reset, config.namespace, config.result_path, config.configurations)
-            config.subexperiment_executor.execute(subexperiment_config)
-            success = config.subexperiment_evaluator.execute(subexperiment_config,
-                                                             config.threshold)
-            if success: # minimal instances found
-                return (upper, subexperiment_counter)
-            else:
-                return (upper+1, subexperiment_counter)
-    else:
-        # test mid
-        mid=(upper+lower)//2
-        print(f"Run subexperiment {subexperiment_counter} with config {dim_value} {config.replicass[mid]}")
-        subexperiment_config = SubexperimentConfig(config.use_case, config.exp_id, subexperiment_counter, dim_value, config.replicass[mid], config.partitions, config.cpu_limit, config.memory_limit, config.execution_minutes, config.prometheus_base_url, config.reset, config.namespace, config.result_path, config.configurations)
-        config.subexperiment_executor.execute(subexperiment_config)
-        success = config.subexperiment_evaluator.execute(subexperiment_config,
-                                                         config.threshold)
-        if success: # success -> search in (lower, mid-1)
-            return binary_search(config, dim_value, lower, mid-1, subexperiment_counter+1)
-        else: # not success -> search in (mid+1, upper)
-            return binary_search(config, dim_value, mid+1, upper, subexperiment_counter+1)
-
-def execute(config, dim_value_index, lower_replicas_bound_index, subexperiment_counter):
-    upper = len(config.replicass)-1
-    dim_value=config.dim_values[dim_value_index]
-    return binary_search(config, dim_value, lower_replicas_bound_index, upper, subexperiment_counter)

execution/strategies/strategies/search/check_all_strategy.py

-# The check_all strategy
-import os
-from strategies.strategies.config import SubexperimentConfig
-
-
-def execute(config, dim_value_index, lower_replicas_bound_index, subexperiment_counter):
-    new_lower_replicas_bound_index = lower_replicas_bound_index
-    new_lower_replicas_bound_found = False
-    subexperiments_total = len(config.dim_values) * len(config.replicass)
-    while lower_replicas_bound_index < len(config.replicass):
-        subexperiment_counter += 1
-        dim_value = config.dim_values[dim_value_index]
-        replicas = config.replicass[lower_replicas_bound_index]
-        print(
-            f"Run subexperiment {subexperiment_counter} of {subexperiments_total} with dimension value {dim_value} and {replicas} replicas.")
-
-        subexperiment_config = SubexperimentConfig(
-            config.use_case, config.exp_id, subexperiment_counter, dim_value,
-            replicas, config.partitions, config.cpu_limit, config.memory_limit,
-            config.execution_minutes, config.prometheus_base_url, config.reset,
-            config.namespace, config.result_path, config.configurations)
-
-        config.subexperiment_executor.execute(subexperiment_config)
-
-        success = config.subexperiment_evaluator.execute(subexperiment_config,
-                                                         config.threshold)
-        if success and not new_lower_replicas_bound_found:
-            new_lower_replicas_bound_found = True
-            new_lower_replicas_bound_index = lower_replicas_bound_index
-        lower_replicas_bound_index += 1
-    return (new_lower_replicas_bound_index, subexperiment_counter)

execution/strategies/strategies/search/linear_search_strategy.py

-# The linear-search strategy
-
-import os
-from strategies.strategies.config import SubexperimentConfig
-
-def execute(config, dim_value_index, lower_replicas_bound_index, subexperiment_counter):
-    subexperiments_total=len(config.dim_values)+len(config.replicass)-1
-    dim_value=config.dim_values[dim_value_index]
-    while lower_replicas_bound_index < len(config.replicass):
-        subexperiment_counter+=1
-        replicas=config.replicass[lower_replicas_bound_index]
-        print(f"Run subexperiment {subexperiment_counter} from at most {subexperiments_total} with dimension value {dim_value} and {replicas} replicas.")
-
-        subexperiment_config = SubexperimentConfig(config.use_case, config.exp_id, subexperiment_counter, dim_value, replicas, config.partitions, config.cpu_limit, config.memory_limit, config.execution_minutes, config.prometheus_base_url, config.reset, config.namespace, config.result_path, config.configurations)
-
-        config.subexperiment_executor.execute(subexperiment_config)
-        success = config.subexperiment_evaluator.execute(subexperiment_config,
-                                                         config.threshold)
-        if success:
-            return (lower_replicas_bound_index, subexperiment_counter)
-        else:
-            lower_replicas_bound_index+=1
-    return (lower_replicas_bound_index, subexperiment_counter)

execution/strategies/subexperiment_evaluation/subexperiment_evaluator.py

-import lib.trend_slope_computer as trend_slope_computer
-import logging
-import os
-
-WARMUP_SEC = 60
-
-def execute(config, threshold):
-    """
-    Check the trend slope of the totallag of the subexperiment if it comes below
-    the threshold.
-
-    :param config: Configuration of the subexperiment.
-    :param threshold: The threshold the trendslope need to come below.
-    """
-    cwd = f'{os.getcwd()}/{config.result_path}'
-    file = f"exp{config.exp_id}_uc{config.use_case}_{config.dim_value}_{config.replicas}_totallag.csv"
-
-    try:
-        trend_slope = trend_slope_computer.compute(cwd, file, WARMUP_SEC)
-    except Exception as e:
-        err_msg = 'Computing trend slope failed'
-        print(err_msg)
-        logging.exception(err_msg)
-        print('Mark this subexperiment as not successful and continue benchmark')
-        return False
-
-    print(f"Trend Slope: {trend_slope}")
-
-    return trend_slope < threshold

execution/strategies/subexperiment_execution/subexperiment_executor.py

-# Wrapper that makes the execution method of a subexperiment interchangable.
-
-import os
-import run_uc
-
-def execute(subexperiment_config):
-    run_uc.main(
-        exp_id=subexperiment_config.exp_id,
-        uc_id=subexperiment_config.use_case,
-        dim_value=int(subexperiment_config.dim_value),
-        instances=int(subexperiment_config.replicas),
-        partitions=subexperiment_config.partitions,
-        cpu_limit=subexperiment_config.cpu_limit,
-        memory_limit=subexperiment_config.memory_limit,
-        execution_minutes=int(subexperiment_config.execution_minutes),
-        prometheus_base_url=subexperiment_config.prometheus_base_url,
-        reset=subexperiment_config.reset,
-        ns=subexperiment_config.namespace,
-        result_path=subexperiment_config.result_path,
-        configurations=subexperiment_config.configurations)

execution/strategies/tests/.gitignore

-.cache
\ No newline at end of file